Publications obtained using resources supporting the biomed VO

Foreword

Note that access to the biomed VO is not based on publication records, however, resource providers may ask for quantitative indicators to justify their support to the VO. Therefore, as a VO member, you are requested to let VO administrators know about your own publications (biomed-vo-managers_#AT#_googlegroups.com). This is of major importance for the sustainability of the VO.

2013

Book chapters

Papers in peer-reviewd international journals

  • R. Ferreira da Silva, T. Glatard, F. Desprez, Self-healing of operational workflow incidents on distributed computing infrastructures, Future Generation Computer Systems (FGCS), in press, 2013.

Papers in peer-reviewed international conferences

  • R. Ferreira da Silva, T. Glatard, F. Desprez, Workflow fairness control on online and non-clairvoyant distributed computing platforms, Euro-Par'13, Aachen, Germany, 2013.
  • R. Ferreira da Silva, T. Glatard, F. Desprez, On-line, non-clairvoyant optimization of workflow activity granularity on grids, Euro-Par'13, Aachen, Germany, 2013.

2012

Book chapters

Papers in peer-reviewd international journals

Papers in peer-reviewed international conferences

  • T. Glatard, A. Marion, H. Benoit-Cattin, S. Camarasu-Pop, P. Clarysse, R. Ferreira da Silva, G. Forestier, B. Gibaud, C. Lartizien, H. Liebgott, et al., "Multi-modality image simulation with the virtual imaging platform: Illustration on cardiac MRI and echography", IEEE International Symposium on Biomedical Imaging (ISBI), Barcelona, Spain, pp. accepted, 2012.
  • R. Ferreira da Silva, T. Glatard, F. Desprez, Self-healing of operational workflow incidents on distributed computing infrastructures, IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid), Ottawa, Canada, 2012.
  • R. Ferreira da Silva, T. Glatard, A science-gateway workload archive to study pilot jobs, user activity, bag of tasks, task sub-steps, and workflow executions, CoreGRID/ERCIM Workshop on Grids, Clouds and P2P Computing (CGWS-2012), Rhodes Island, Greece, 2012.

Papers in peer-reviewed national conferences

  • R. Ferreira da Silva, T. Glatard, F. Desprez, A science-gateway workload archive: application to the self-healing of workflow incidents, Journées scientifiques mésocentres et France Grilles 2012, Paris, France, 2012.

2011

Book chapters

  • S. Camarasu-Pop, T. Glatard, H. Benoit-Cattin, and D. Sarrut, "Enabling Grids for GATE Monte-Carlo Radiation Therapy Simulations with the GATE-Lab", Applications of Monte Carlo Method in Science and Engineering, 2011.

Papers in peer-reviewed international journals

  • T. Glatard, and S. Camarasu-Pop, "A model of pilot-job resource provisioning on production grids", Parallel Computing, vol. Available online 9 April 2011, 2011
  • L. Grevillot, D. Bertrand, F. Dessy, N. Freud, and D. Sarrut. "A Monte Carlo pencil beam scanning model for proton treatment plan simulation using GATE/GEANT4." Physics in Medicine and Biology, 56(16):5203-5219, 2011.
  • L. Grevillot, T Frisson, D Maneval, N Zahra, J-N Badel, and D Sarrut. "Simulation of a 6 MV Elekta Precise Linac photon beam using GATE/GEANT4." Physics in Medicine and Biology, 56(4):903-918, 2011.

Papers in peer-reviewed international conferences

  • B. Leporq, S. Camarasu-Pop, F. Pilleul, and O. Beuf, "3D-liver quantitative perfusion mapping using EGEE grid with MR-DCE imaging and MS-325 blood pool contrast agent", ISMRM, Montreal, Canada, pp. 2046, May, 2011.
  • S. B. Fredj, T. Glatard, C. Casta, and P. Clarysse, "An exploration framework for segmentation parameter spaces", IEEE International Conference on Image Processing , Brussels, Belgium, 2011.
  • R. Ferreira da Silva, S. Camarasu-Pop, B. Grenier, V. Hamar, D. Manset, J. Montagnat, J. Revillard, J. R. Balderrama, A. Tsaregorodtsev, and T. Glatard, "Multi-infrastructure workflow execution for medical simulation in the Virtual Imaging Platform", HealthGrid 2011, Bristol, UK, 2011.
  • A. Marion, G. Forestier, H. Benoit-Cattin, S. Camarasu-Pop, P. Clarysse, R. Ferreira da Silva, B. Gibaud, T. Glatard, P. Hugonnard, C. Lartizien, et al., "Multi-modality medical image simulation of biological models with the Virtual Imaging Platform (VIP)", The 24th International Symposium on Computer-Based Medical Systems (CBMS 2011), Bristol, UK, 2011.
  • P. Gueth, S. Camarasu-Pop, T. Glatard, L. Grevillot, and D. Sarrut, "PBS proton treatment plan simulation with the GATE-Lab", 50th International PTCOG meeting (Particle Therapy Co-Operative Group), Philadelphia, US, 2011.
  • G. Forestier, A. Marion, H. Benoit-Cattin, P. Clarysse, D. Friboulet, T. Glatard, P. Hugonnard, C. Lartizien, H. Liebgott, J. Tabary, et al., "Sharing object models for multi-modality medical image simulation: a semantic approach", The 24th International Symposium on Computer-Based Medical Systems (CBMS 2011), Bristol, UK, 2011.
  • B. Gibaud, F. Ahmad, C. Barillot, F. Michel, B. Wali, B. Batrancourt, M. Dojat, P. Girard, A. Gaignard, D. Lingrand, J. Montagnat, J. Rojas Balderrama, G. Malandain, X. Pennec, D. Godard, G. Kassel, M. Pélégrini-Issac. "A federated system for sharing and reuse of images and image processing tools in neuroimaging", Computer Assisted Radiology and Surgery (CARS'11), Berlin, Germany, June 2011.
  • T-T. Doan, Q-M. Dao, T-H. Vu, H-P. Pham, V. Breton, H-Q. Nguyen, J. Salzeman, Y. Legré, T-H. Le, J. Montagnat. "g-INFO portal: a solution to monitor Influenza A on the Grid for non-grid users", HealthGrid'11, Bristol, UK, June 2011
  • A. Kertesz, F. Otvos, P. Kacsuk, Gridifying the TINKER conformer generator application for gLite Grid, M.R. Guarracino et al. (Eds.): Euro-Par 2010 Workshops, LNCS 6586, pp. 185-192, 2011.

Miscellaneous

2010

Book chapters

Papers in peer-reviewed international journals

  • S. Camarasu-Pop, T. Glatard, J. T. Moscicki, H. Benoit-Cattin, and D. Sarrut, "Dynamic partitioning of GATE Monte-Carlo simulations on EGEE", Journal of Grid Computing, vol. 8, no. 2, pp. 241-259, mar, 2010
  • D. Lingrand, J. Montagnat, J. Martyniak, D. Colling. "Optimization of jobs submission on the EGEE production grid: modeling faults using workload", Journal of Grid Computing , vol. 8 no. 2, pp. 305-321, mar 2010
  • P. Descourt, T. Carlier, Y. Du, X. Song, I. Buvat, E. C. Frey, M. Bardiès, B. M. W. Tsui, D. Visvikis, "Implementation of angular response function modeling in SPECT simulations with GATE", Phys Med Biol, 55 (2010) N253-N266

Papers in peer-reviewed international conferences

  • D. Lingrand, J. Montagnat. "Efficient resubmission strategies to design robust grid production environments", IEEE e-Science, Brisbane, Australia, December 2010.
  • T. Li, S. Camarasu-Pop, T. Glatard, T. Grenier, and H. Benoit-Cattin, "Optimization of Mean-Shift scale parameters on the EGEE grid", Studies in health technology and informatics, Proceedings of Healthgrid 2010, vol. 159, pp. 203-214, 2010.
  • W. - J. Tan, C. T. M. Ching, S. Camarasu-Pop, P. Calvat, and T. Glatard, "Two experiments with application-level quality of service on the EGEE grid", Proceeding of the 2nd workshop on Grids meets autonomic computing, New York, NY, USA, ACM, pp. 11–20, 2010.
  • J. Montagnat, T. Glatard, D. Reimert, K. Maheshwari, E. Caron, and F. Desprez, "Workflow-based comparison of two Distributed Computing Infrastructures", 5th Workshop on Workflows in Support of Large-Scale Science (WORKS10), New-Orleans, LA, 10/2010.
  • Soonwook Hwang, Sehoon Lee, Sangdo Lee, Jincheol Kim, Vincent Breton, Jean Salzemann, Doman Kim, "A Grid-enabled Problem Solving Environment for in-silico Screening in Drug Discovery", 5th International Conference on Computer Sciences and Convergence Information Technology (ICCIT 2010), Seoul, Korea, December 2010.
  • J. Passerat-Palmbach, C. Mazel, A. Mahul and D. R. C. Hill, "Reliable Initialization of GPU-enabled Parallel Stochastic Simulations Using Mersenne Twister for Graphics Processors", Europeans Simulation and Modeling Conference 2010 (ESM2010), Hasselt, Belgium, October 2010, pp 187-195

Miscellaneous

2009

Book chapters

Papers in peer-reviewed international journals

Papers in peer-reviewed international conferences

  • T. Carlier, P. Descourt, L. Maigne, D. Visvikis, M. Bardiès, I. Buvat. "Efficient simulations of Iodine 131 SPECT scans using GATE", Proc IEEE Nuclear Science Symp Medical Imaging Conf, (2009) pp 3412-14.

Miscellaneous